Spatial information allows inference of the prevalence of direct cell-to-cell viral infection

The role of direct cell-to-cell spread in viral infections - where virions spread between host and susceptible cells without needing to be secreted into the extracellular environment - has come to be understood as essential to the dynamics of medically significant viruses like hepatitis C and influenza. Recent work in both the experimental and mathematical modelling literature has attempted to quantify the prevalence of cell-to-cell infection compared to the conventional free virus route using a variety of methods and experimental data. However, estimates are subject to significant uncertainty and moreover rely on data collected by inhibiting one mode of infection by either chemical or physical factors. These methods assume that this inhibition process fully eliminates its target mode of infection while exactly preserving the dynamics of the other. In this work, we provide a framework for estimating the prevalence of cell-to-cell infection from data which is experimentally obtainable without the need for additional interventions, and two standard mathematical models for viral dynamics with the two modes of infection. We provide guidance for the design of relevant experiments and mathematical tools for accurately inferring the prevalence of cell-to-cell infection

Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues.

The development of new models of biological tissues that consider cells in a discrete manner is becoming increasingly popular as an alternative to continuum methods based on partial differential equations, although formal relationships between the discrete and continuum frameworks remain to be established. For crystal mechanics, the discrete-to-continuum bridge is often made by assuming that local atom displacements can be mapped homogeneously from the mesoscale deformation gradient, an assumption known as the Cauchy-Born rule (CBR). Although the CBR does not hold exactly for noncrystalline materials, it may still be used as a first-order approximation for analytic calculations of effective stresses or strain energies. In this work, our goal is to investigate numerically the applicability of the CBR to two-dimensional cellular-scale models by assessing the mechanical behavior of model biological tissues, including crystalline (honeycomb) and noncrystalline reference states. The numerical procedure involves applying an affine deformation to the boundary cells and computing the quasistatic position of internal cells. The position of internal cells is then compared with the prediction of the CBR and an average deviation is calculated in the strain domain. For center-based cell models, we show that the CBR holds exactly when the deformation gradient is relatively small and the reference stress-free configuration is defined by a honeycomb lattice. We show further that the CBR may be used approximately when the reference state is perturbed from the honeycomb configuration. By contrast, for vertex-based cell models, a similar analysis reveals that the CBR does not provide a good representation of the tissue mechanics, even when the reference configuration is defined by a honeycomb lattice. The paper concludes with a discussion of the implications of these results for concurrent discrete and continuous modeling, adaptation of atom-to-continuum techniques to biological tissues, and model classification

A method for evaluating MPSK performance using a (M/2)PSK signal set

As data rate demands on existing satellite systems increase, the need to evaluate more bandwidth efficient modulation schemes such as M-ary phase Shift Keying (MPSK) becomes important. However, the unavailability of higher order modems operational at higher data rates and the construction of such a complex device for testing purposes can make evaluation difficult. In support of NASA grant NAG 5-1491, New Mexico State University has developed a method of evaluating the performance of 8PSK in a satellite channel using a QPSK signal set. This paper will discuss this technique and will generalize the results to the use of any (M/2)PSK signal set to evaluate MPSK modulation. Verification by both computer simulation and hardware implementation will also be discussed

Seasonal variation and impact of waste-water lagoons as larval habitat on the population dynamics of Culicoides sonorensis (Diptera:Ceratpogonidae) at two dairy farms in northern California.

The Sacramento (northern Central) Valley of California (CA) has a hot Mediterranean climate and a diverse ecological landscape that is impacted extensively by human activities, which include the intensive farming of crops and livestock. Waste-water ponds, marshes, and irrigated fields associated with these agricultural activities provide abundant larval habitats for C. sonorensis midges, in addition to those sites that exist in the natural environment. Within this region, C. sonorensis is an important vector of bluetongue (BTV) and related viruses that adversely affect the international trade and movement of livestock, the economics of livestock production, and animal welfare. To characterize the seasonal dynamics of immature and adult C. sonorensis populations, abundance was monitored intensively on two dairy farms in the Sacramento Valley from August 2012- to July 2013. Adults were sampled every two weeks for 52 weeks by trapping (CDC style traps without light and baited with dry-ice) along N-S and E-W transects on each farm. One farm had large operational waste-water lagoons, whereas the lagoon on the other farm was drained and remained dry during the study. Spring emergence and seasonal abundance of adult C. sonorensis on both farms coincided with rising vernal temperature. Paradoxically, the abundance of midges on the farm without a functioning waste-water lagoon was increased as compared to abundance on the farm with a waste-water lagoon system, indicating that this infrastructure may not serve as the sole, or even the primary larval habitat. Adult midges disappeared from both farms from late November until May; however, low numbers of parous female midges were detected in traps set during daylight in the inter-seasonal winter period. This latter finding is especially critical as it provides a potential mechanism for the "overwintering" of BTV in temperate regions such as northern CA. Precise documentation of temporal changes in the annual abundance and dispersal of Culicoides midges is essential for the creation of models to predict BTV infection of livestock and to develop sound abatement strategies

Ecosystem service provision by road verges

1. Roads form a vast, rapidly growing global network that has diverse, detrimental ecological impacts. However, the habitats that border roads (‘road verges’) form a parallel network that might help mitigate these impacts and provide additional benefits (ecosystem services; ES). 2. We evaluate the capacity of road verges to provide ES by reviewing existing research and considering their relevant characteristics: area, connectivity, shape, and contextual ES supply and demand. We consider the present situation, and how this is likely to change based on future projections for growth in road extent, traffic densities and urban populations. 3. Road verges not only provide a wide range of ES, including biodiversity provision, regulating services (e.g. air and water filtration) and cultural services (e.g. health and aesthetic benefits by providing access to nature) but also displace other habitats and provide ecosystem disservices (e.g. plant allergens and damage to infrastructure). Globally, road verges may currently cover 270,000 km2 and store 0.015 Gt C/year, which will further increase with 70% projected growth in the global road network. 4. Road verges are well placed to mitigate traffic pollution and address demand for ES in surrounding ES‐impoverished landscapes, thereby improving human health and well‐being in urban areas, and improving agricultural production and sustainability in farmland. Demand for ES provided by road verges will likely increase due to projected growth in traffic densities and urban populations, though traffic pollution will be reduced by technological advances (e.g. electric vehicles). Road verges form a highly connected network, which may enhance ES provision but facilitate the dispersal of invasive species and increase vehicle–wildlife collisions. 5. Synthesis and applications. Road verges offer a significant opportunity to mitigate the negative ecological effects of roads and to address demand for ecosystem services (ES) in urban and agricultural landscapes. Their capacity to provide ES might be enhanced considerably if they were strategically designed and managed for environmental outcomes, namely by optimizing the selection, position and management of plant species and habitats. Specific opportunities include reducing mowing frequencies and planting trees in large verges. Road verge management for ES must consider safety guidelines, financial costs and ecosystem disservices, but is likely to provide long‐term financial returns if environmental benefits are considered

Cobalt Complexes of Bulky PNP Ligand: H2 Activation and Catalytic Two-Electron Reactivity in Hydrogenation of Alkenes and Alkynes

The reactivity of cobalt pincer complexes supported by the bulky tetramethylated PNP ligands Me4PNPR(R = iPr, tBu) has been investigated. In these ligands, the undesired H atom loss reactivity observed earlier in some classical CH2-arm PNP cobalt complexes is blocked, allowing them to be utilized for promoting two-electron catalytic transformations at the cobalt center. Accordingly, reaction of the formally CoIMe complex 3 with H2 under ambient pressure and temperature afforded the CoIII trihydride 4-H, in a reaction cascade reasoned to proceed by two-electron oxidative addition and reductive eliminations. This mechanistic proposal, alongside the observance of alkene insertion and ethane production upon sequential exposure of 3 to ethylene and H2, prompted an exploration into 3 as a catalyst for hydrogenation. Complex 4-H, formed in situ from 3 under H2, was found to be active in the catalytic hydrogenation of alkenes and alkynes. The proposed two-electron mechanism is reminiscent of the platinum group metals and demonstrates the utility of the bulky redox-innocent Me4PNPR ligand in the avoidance of one-electron reactivity, a concept that may show broad applicability in expanding the scope of earth-abundant first-row transition-metal catalysis.journal articl

Cell morphology drives spatial patterning in microbial communities

The clearest phenotypic characteristic of microbial cells is their shape, but we do not understand how cell shape affects the dense communities, known as biofilms, where many microbes live. Here, we use individual-based modeling to systematically vary cell shape and study its impact in simulated communities. We compete cells with different cell morphologies under a range of conditions and ask how shape affects the patterning and evolutionary fitness of cells within a community. Our models predict that cell shape will strongly influence the fate of a cell lineage: we describe a mechanism through which coccal (round) cells rise to the upper surface of a community, leading to a strong spatial structuring that can be critical for fitness. We test our predictions experimentally using strains of Escherichia coli that grow at a similar rate but differ in cell shape due to single amino acid changes in the actin homolog MreB. As predicted by our model, cell types strongly sort by shape, with round cells at the top of the colony and rod cells dominating the basal surface and edges. Our work suggests that cell morphology has a strong impact within microbial communities and may offer new ways to engineer the structure of synthetic communities